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1

Data storage in DNA with fewer synthesis cycles using composite DNA letters

Anavy, Leon, Vaknin, Inbal, Atar, Orna, Amit, Roee, Yakhini, Zohar

Journal:

Nature Biotechnology

Year:

2019

Language:

english

File:

PDF, 4.49 MB

english, 2019

2

Gene expression and the concept of the phenotype

Ohad Nachtomy, Ayelet Shavit, Zohar Yakhini

Journal:

Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences

Year:

2007

Language:

english

File:

PDF, 368 KB

english, 2007

3

Polycomb-mediated methylation on Lys27 of histone H3 pre-marks genes for de novo methylation in cancer

Schlesinger, Yeshayahu, Straussman, Ravid, Keshet, Ilana, Farkash, Shlomit, Hecht, Merav, Zimmerman, Joseph, Eden, Eran, Yakhini, Zohar, Ben-Shushan, Etti, Reubinoff, Benjamin E

Journal:

Nature Genetics

Year:

2006

Language:

english

File:

PDF, 163 KB

english, 2006

4

Inferring gene regulatory logic from high-throughput measurements of thousands of systematically designed promoters

Sharon, Eilon, Kalma, Yael, Sharp, Ayala, Raveh-Sadka, Tali, Levo, Michal, Zeevi, Danny, Keren, Leeat, Yakhini, Zohar, Weinberger, Adina, Segal, Eran

Journal:

Nature Biotechnology

Year:

2012

Language:

english

File:

PDF, 2.20 MB

english, 2012

5

Discovering Local Structure in Gene Expression Data: The Order-Preserving Submatrix Problem

Ben-Dor, Amir, Chor, Benny, Karp, Richard, Yakhini, Zohar

Journal:

Journal of Computational Biology

Year:

2003

Language:

english

File:

PDF, 278 KB

english, 2003

6

Dotted interval graphs

Aumann, Yonatan, Lewenstein, Moshe, Melamud, Oren, Pinter, Ron, Yakhini, Zohar

Journal:

ACM Transactions on Algorithms

Year:

2012

Language:

english

File:

PDF, 461 KB

english, 2012

7

BioLEGO — a web-based application for biorefinery design and evaluation of serial biomass fermentation

Vitkin, Edward, Golberg, Alexander, Yakhini, Zohar

Journal:

Year:

2015

Language:

english

File:

PDF, 1.67 MB

english, 2015

8

Author Correction: Data storage in DNA with fewer synthesis cycles using composite DNA letters

Anavy, Leon, Vaknin, Inbal, Atar, Orna, Amit, Roee, Yakhini, Zohar

Journal:

Nature Biotechnology

Year:

2019

File:

PDF, 476 KB

2019

9

Designing optimally multiplexed SNP genotyping assays

Yonatan Aumann, Efrat Manisterski, Zohar Yakhini

Journal:

Journal of Computer and System Sciences

Year:

2005

Language:

english

File:

PDF, 395 KB

english, 2005

10

A structural-based statistical approach suggests a cooperative activity of PUM1 and miR-410 in human 3'-untranslated regions

Limor Leibovich, Yael Mandel-Gutfreund, Zohar Yakhini

Journal:

Year:

2010

Language:

english

File:

PDF, 1.61 MB

english, 2010

11

Feature extraction and clustering tools for analysing gene expression data from DNA microarrays

Sampas, Nick, Yakhini, Zohar, Delenstarr, Glenda, Enderwick, Cynthia, Ben-Dor, Amir, Kim, Stuart, Shamir, Ron

Journal:

Nature Genetics

Year:

1999

Language:

english

File:

PDF, 119 KB

english, 1999

12

Analysis of gene expression data: clustering and beyond

Yakhini, Zohar, Ben-Dor, Amir, Kim, Stuart, Shamir, Ron

Journal:

Nature Genetics

Year:

1999

Language:

english

File:

PDF, 90 KB

english, 1999

13

Statistical benchmarking and class discovery in gene expression data

Ben-Dor, Amir, Friedman, Nir, Yakhini, Zohar

Journal:

Nature Genetics

Year:

2001

Language:

english

File:

PDF, 31 KB

english, 2001

14

Developmental programming of CpG island methylation profiles in the human genome

Straussman, Ravid, Nejman, Deborah, Roberts, Douglas, Steinfeld, Israel, Blum, Barak, Benvenisty, Nissim, Simon, Itamar, Yakhini, Zohar, Cedar, Howard

Journal:

Nature Structural and Molecular Biology

Year:

2009

Language:

english

File:

PDF, 760 KB

english, 2009

15

GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists

Eran Eden, Roy Navon, Israel Steinfeld, Doron Lipson, Zohar Yakhini

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 657 KB

english, 2009

16

Semi-supervised class discovery using quantitative phenotypes – CVD as a case study

Israel Steinfeld, Roy Navon, Diego Ardigò, Ivana Zavaroni, Zohar Yakhini

Journal:

BMC Bioinformatics

Year:

2007

Language:

english

File:

PDF, 192 KB

english, 2007

17

Multilocus analysis of SNP and metabolic data within a given pathway

Vessela N Kristensen, Anya Tsalenko, Jurgen Geisler, Anne Faldaas, Grethe Irene Grenaker, Ole Christian Lingjærde, Ståle Fjeldstad, Zohar Yakhini, Per Eystein Lønning, Anne-Lise Børresen-Dale

Journal:

Year:

2006

Language:

english

File:

PDF, 471 KB

english, 2006

18

Gene-Expression Profiles in Hereditary Breast Cancer

Hedenfalk, Ingrid, Duggan, David, Chen, Yidong, Radmacher, Michael, Bittner, Michael, Simon, Richard, Meltzer, Paul, Gusterson, Barry, Esteller, Manel, Raffeld, Mark, Yakhini, Zohar, Ben-Dor, Amir, Do

Journal:

Boston Medical and Surgical Journal

Year:

2001

Language:

english

File:

PDF, 396 KB

english, 2001

19

Ischemia caused by time to freezing induces systematic microRNA and mRNA responses in cancer tissue

Eldrid Borgan, Roy Navon, Hans Kristian Moen Vollan, Ellen Schlichting, Torill Sauer, Zohar Yakhini, Ole Christian Lingjærde, Therese Sørlie, Anne-Lise Børresen-Dale

Journal:

Molecular Oncology

Year:

2011

Language:

english

File:

PDF, 1.12 MB

english, 2011

20

Cancer computational biology

Zohar Yakhini, Igor Jurisica

Journal:

BMC Bioinformatics

Year:

2011

Language:

english

File:

PDF, 2.19 MB

english, 2011

21

Comparative Analysis of DNA Replication Timing Reveals Conserved Large-Scale Chromosomal Architecture

Yaffe, Eitan, Farkash-Amar, Shlomit, Polten, Andreas, Yakhini, Zohar, Tanay, Amos, Simon, Itamar, Bickmore, Wendy A.

Journal:

Year:

2010

Language:

english

File:

PDF, 1.01 MB

english, 2010

22

Clustering Gene Expression Patterns

Ben-Dor, Amir, Shamir, Ron, Yakhini, Zohar

Journal:

Journal of Computational Biology

Year:

1999

Language:

english

File:

PDF, 748 KB

english, 1999

23

Proposed design of distributed macroalgal biorefineries: thermodynamics, bioconversion technology, and sustainability implications for developing economies

Golberg, Alexander, Vitkin, Edward, Linshiz, Gregory, Khan, Sabaa Ahmad, Hillson, Nathan J., Yakhini, Zohar, Yarmush, Martin L.

Journal:

Biofuels, Bioproducts and Biorefining

Year:

2014

Language:

english

File:

PDF, 1.20 MB

english, 2014

24

Tissue Classification with Gene Expression Profiles

Ben-Dor, Amir, Bruhn, Laurakay, Friedman, Nir, Nachman, Iftach, Schummer, Michèl, Yakhini, Zohar

Journal:

Journal of Computational Biology

Year:

2000

Language:

english

File:

PDF, 1.22 MB

english, 2000

25

Association of N-Glycosylation with Breast Carcinoma and Systemic Features Using High-Resolution Quantitative UPLC

Saldova, Radka, Asadi Shehni, Akram, Haakensen, Vilde D., Steinfeld, Israel, Hilliard, Mark, Kifer, Ilona, Helland, Åslaug, Yakhini, Zohar, Børresen-Dale, Anne-Lise, Rudd, Pauline M.

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 7.67 MB

english, 2014

26

Mutual enrichment in ranked lists and the statistical assessment of position weight matrix motifs

Leibovich, Limor, Yakhini, Zohar

Journal:

Algorithms for Molecular Biology

Year:

2014

Language:

english

File:

PDF, 819 KB

english, 2014

27

Probing the effect of promoters on noise in gene expression using thousands of designed sequences

Sharon, Eilon, van Dijk, David, Kalma, Yael, Keren, Leeat, Manor, Ohad, Yakhini, Zohar, Segal, Eran

Journal:

Genome Research

Year:

2014

Language:

english

File:

PDF, 4.06 MB

english, 2014

28

Peer group normalization and urine to blood context in steroid metabolomics: The case of CAH and obesity

Vitkin, Edward, Ben-Dor, Amir, Shmoish, Michael, Hartmann, Michaela F., Yakhini, Zohar, Wudy, Stefan A., Hochberg, Ze’ev

Journal:

Year:

2014

Language:

english

File:

PDF, 1.78 MB

english, 2014

29

Finding Approximate Tandem Repeats in Genomic Sequences

Wexler, Ydo, Yakhini, Zohar, Kashi, Yechezkel, Geiger, Dan

Journal:

Journal of Computational Biology

Year:

2005

Language:

english

File:

PDF, 344 KB

english, 2005

30

Retinoic acid receptor alpha is associated with tamoxifen resistance in breast cancer

Johansson, Henrik J., Sanchez, Betzabe C., Mundt, Filip, Forshed, Jenny, Kovacs, Aniko, Panizza, Elena, Hultin-Rosenberg, Lina, Lundgren, Bo, Martens, Ulf, Máthé, Gyöngyvér, Yakhini, Zohar, Helou, Kha

Journal:

Nature Communications

Year:

2013

Language:

english

File:

PDF, 1.49 MB

english, 2013

31

Universal DNA Tag Systems: A Combinatorial Design Scheme

Ben-Dor, Amir, Karp, Richard, Schwikowski, Benno, Yakhini, Zohar

Journal:

Journal of Computational Biology

Year:

2000

Language:

english

File:

PDF, 358 KB

english, 2000

32

Efficient Calculation of Interval Scores for DNA Copy Number Data Analysis

Lipson, Doron, Aumann, Yonatan, Ben-Dor, Amir, Linial, Nathan, Yakhini, Zohar

Journal:

Journal of Computational Biology

Year:

2006

Language:

english

File:

PDF, 232 KB

english, 2006

33

Multiplexing Schemes for Generic SNP Genotyping Assays

Sharan, Roded, Gramm, Jens, Yakhini, Zohar, Ben-Dor, Amir

Journal:

Journal of Computational Biology

Year:

2005

Language:

english

File:

PDF, 219 KB

english, 2005

34

Towards Optimally Multiplexed Applications of Universal Arrays

Ben-Dor, Amir, Hartman, Tzvika, Karp, Richard M., Schwikowski, Benno, Sharan, Roded, Yakhini, Zohar

Journal:

Journal of Computational Biology

Year:

2004

Language:

english

File:

PDF, 293 KB

english, 2004

35

A High-Throughput Approach for Associating MicroRNAs with Their Activity Conditions

Zilberstein, Chaya Ben-Zaken, Ziv-Ukelson, Michal, Pinter, Ron Y., Yakhini, Zohar

Journal:

Journal of Computational Biology

Year:

2006

Language:

english

File:

PDF, 338 KB

english, 2006

36

Exploratory visualization of array-based comparative genomic hybridization

Kincaid, Robert, Ben-Dor, Amir, Yakhini, Zohar

Journal:

Information Visualization

Year:

2005

Language:

english

File:

PDF, 844 KB

english, 2005

37

ANALYSIS OF SNP-EXPRESSION ASSOCIATION MATRICES

TSALENKO, ANYA, SHARAN, RODED, KRISTENSEN, VESSELA, EDVARDSEN, HEGE, BØRRESEN-DALE, ANNE-LISE, BEN-DOR, AMIR, YAKHINI, ZOHAR

Journal:

Journal of Bioinformatics and Computational Biology

Year:

2006

Language:

english

File:

PDF, 437 KB

english, 2006

38

Unraveling determinants of transcription factor binding outside the core binding site

Levo, Michal, Zalckvar, Einat, Sharon, Eilon, Dantas Machado, Ana Carolina, Kalma, Yael, Lotam-Pompan, Maya, Weinberger, Adina, Yakhini, Zohar, Rohs, Remo, Segal, Eran

Journal:

Genome Research

Year:

2015

Language:

english

File:

PDF, 1.60 MB

english, 2015

39

RNAPattMatch: a web server for RNA sequence/structure motif detection based on pattern matching with flexible gaps

Drory Retwitzer, Matan, Polishchuk, Maya, Churkin, Elena, Kifer, Ilona, Yakhini, Zohar, Barash, Danny

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.95 MB

english, 2015

40

It Takes Two to Tango: Genotyping and Phenotyping in Genome-Wide Association Studies

Nachtomy, Ohad, Ramati, Yaron, Shavit, Ayelet, Yakhini, Zohar

Journal:

Biological Theory

Year:

2009

Language:

english

File:

PDF, 108 KB

english, 2009

41

Systematic Dissection of the Sequence Determinants of Gene 3’ End Mediated Expression Control

Shalem, Ophir, Sharon, Eilon, Lubliner, Shai, Regev, Ifat, Lotan-Pompan, Maya, Yakhini, Zohar, Segal, Eran, Madhani, Hiten D.

Journal:

Year:

2015

Language:

english

File:

PDF, 4.22 MB

english, 2015

42

Discovering Motifs in Ranked Lists of DNA Sequences

Eden, Eran, Lipson, Doron, Yogev, Sivan, Yakhini, Zohar

Journal:

PLoS Computational Biology

Year:

2007

Language:

english

File:

PDF, 850 KB

english, 2007

43

[ACM Press the sixth annual international conference - Washington, DC, USA (2002.04.18-2002.04.21)] Proceedings of the sixth annual international conference on Computational biology - RECOMB '02 - Discovering local structure in gene expression data

Ben-Dor, Amir, Chor, Benny, Karp, Richard, Yakhini, Zohar

Year:

2002

Language:

english

File:

PDF, 2.47 MB

english, 2002

44

[ACM Press the fourth annual international conference - Tokyo, Japan (2000..-..)] Proceedings of the fourth annual international conference on Computational molecular biology - RECOMB '00 - Universal DNA tag systems

Ben-Dor, Amir, Karp, Richard, Schwikowski, Benno, Yakhini, Zohar

Year:

2000

Language:

english

File:

PDF, 805 KB

english, 2000

45

[ACM Press the fifth annual international conference - Montreal, Quebec, Canada (2001.04.22-2001.04.25)] Proceedings of the fifth annual international conference on Computational biology - RECOMB '01 - Class discovery in gene expression data

Ben-Dor, Amir, Friedman, Nir, Yakhini, Zohar

Year:

2001

Language:

english

File:

PDF, 238 KB

english, 2001

46

[ACM Press the third annual international conference - Lyon, France (1999.04.11-1999.04.14)] Proceedings of the third annual international conference on Computational molecular biology - RECOMB '99 - Clustering gene expression patterns

Ben-Dor, Amir, Yakhini, Zohar

Year:

1999

Language:

english

File:

PDF, 1.01 MB

english, 1999

47

[ACM Press the eighth annual international conference - San Diego, California, USA (2004.03.27-2004.03.31)] Proceedings of the eighth annual international conference on Computational molecular biology - RECOMB '04 - Finding approximate tandem repeats in genomic sequences

Wexler, Ydo, Yakhini, Zohar, Kashi, Yechezkel, Geiger, Dan

Year:

2004

Language:

english

File:

PDF, 615 KB

english, 2004

48

[ACM Press the fourth annual international conference - Tokyo, Japan (2000..-..)] Proceedings of the fourth annual international conference on Computational molecular biology - RECOMB '00 - Tissue classification with gene expression profiles

Ben-Dor, Amir, Bruhn, Laurakay, Friedman, Nir, Nachman, Iftach, Schummer, Michèl, Yakhini, Zohar

Year:

2000

Language:

english

File:

PDF, 1.06 MB

english, 2000

49

Use of Oligonucleotide Microarrays to Analyze Gene Expression Patterns in Pulmonary Fibrosis Reveals Distinct Patterns of Gene Expression in Mice and Humans

Kaminski, Naftali, Zuo, Fengrong, Cojocaro, Gady, Yakhini, Zohar, Ben-Dor, Amir, Morris, David, Sheppard, Dean, Pardo, Annie, Selman, Moises, Heller, Renu A.

Journal:

Year:

2002

Language:

english

File:

PDF, 81 KB

english, 2002

50

Optimizing analytical depth and cost efficiency of IEF-LC/MS proteomics

Kifer, Ilona, Ben-Dor, Amir, Yakhini, Zohar, Branca, Rui, Lehtio, Janne, Zhai, Linhui, Xu, Ping

Journal:

IEEE/ACM Transactions on Computational Biology and Bioinformatics

Year:

2015

Language:

english

File:

PDF, 720 KB

english, 2015

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